June 18 News: Autism Is Twice As Likely In Children Living Near High Air Pollution Areas | ThinkProgress

June 18 News: Autism Is Twice As Likely In Children Living Near High Air Pollution Areas | ThinkProgress.

Great article and more science to add to the growing knowledge of autism mechanisms.

Gotta give it up to algae; I wouldn’t want to live in wastewater: Illustrated Chlamydomonas

bacteria, microbiology, animated bacteria, chlamy
Graphic illustration of Chlamydomonas reinhardtii, a model organism for fatty acid production to replace transportation fuels.

Infographic: I’m glad we don’t have as much impact on the atmosphere as bacteria

As humans, we are contributing to global warming every time we breathe. Luckily, this contribution doesn’t amount to a hill of beans. The amount of carbon dioxide we excrete while breathing is easily converted to other molecules by other organisms on Earth. We, as humans, number roughly 7 billion. That is a lot of carbon dioxide. However, we are outnumbered by plants and trees by several orders of magnitude that consume this carbon dioxide and convert it back to the oxygen we so desperately need and make carbohydrates in the process.

Now, think about this: 7 billion humans converted to microbes living in the soil would amount to a pinch of soil. As you should know, there is much more than a pinch of soil on the planet, and that does not take into account the waters of Earth. So, doesn’t it make sense that what these microbes take in and “breathe” out has a much much greater impact on the composition of our atmosphere? Luckily, microbes, in the general sense, don’t breathe carbon dioxide under most conditions and some microbes like algae consume carbon dioxide like plants and give us oxygen in return.

bacteria, climate change
Affect of each domain of life on the composition of the atmosphere.

The figure above shows how simplistic plants and animals are compared to prokaryotes in regards to what we all “breathe”. This is not an exhaustive list of molecules microbes use; it’s just one small group of bacteria from the genus Geobacter. This complexity helps put things in perspective.

Carbon capture: an animated GIF of the RuBisCO reaction of the Calvin Cycle

carbon fixation, RuBisCO, carbon capture, calvin cycle
RuBisCO (cyan color) converting ribulose 1,5-bisphosphate and carbon dioxide into two molecules of 3-phosphoglycerate

Micro! Polo!: Discovering the beneficial bacteria needed to clean our messes

Micro polo

Bacteria do not have taste buds or eyes. However, they have very fine-tuned senses that relay information about the status inside as well as in their environment. To compete and survive in virtually all environments on the planet, bacteria have evolved to sense and utilize many chemical compounds (most of which are still unknown) for energy and existence no matter how we as humans feel about these compounds. Even toxic compounds are easily metabolized by some bacteria. Whether it is hydrocarbons like petroleum or groundwater contaminated with dry cleaning chemicals, bacteria have evolved pathways to utilize these compounds.

Imagine restoring highly contaminated land for public use without expensive machinery or excessive human exposure. Current research within DOE is working towards this goal through bioremediation, utilizing bacteria with ability to render radioactive or otherwise hazardous material harmless. Even though most microbes presently performing this task are unknown, meta-sequencing projects are turning up a common set of genes (and proteins) necessary for this process.

Let’s briefly take a look at some of these toxic compounds.


Here we have (from left to right) perchloroethene, trichloroethene, and dichloroethene. PCE is a common chemical used in dry cleaning and easily contaminates groundwater. It’s removal is expensive and time-consuming, not to mention dangerous given its toxicity. However, a small number (so far) of bacteria can actually use these chemicals during metabolism when oxygen is absent from the environment (deep underground, for example). DCE is still considered a contaminant, so, how do we get rid of it? A group of bacteria discovered not long ago actually have the complete set of genes to breakdown perchloroethene to ethylene, Dehalococcoides. These bacteria have small genomes relative to the average bacterium but contain a set of genes that will render these contaminants essentially harmless.

vinyl chloride and ethylene

Vinyl chloride, the next step in PCE degradation can be further reduced to ethylene by an enzyme called vinyl chloride reductase (Vcr). To date, only Dehalococcoides are found to contain Vcr genes.

Next, I will talk about other common contaminants and the wonderful bacteria that can clean them up.

‘Zoomable’ map of poplar proteins offers new view of bioenergy crop

‘Zoomable’ map of poplar proteins offers new view of bioenergy crop.

A story about a political insider and his experience in jail for protesting the Keystone XL Pipeline. A must read…

A presidential adviser, radicalized by American inaction on climate change | MinnPost.